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Computational Models

Integrative and Multiscale Modelling Special Issue: Call for Papers

Computational Models

Integrative and Multiscale Modelling Special Issue: Call for Papers

in silico Plants is calling for papers for a special issue on integrative and multiscale modelling. This special issue will aim to publish research describing improved and newly developed multiscale models and tools.

Rachel Shekar · 19 Apr 2022

The signaling cascades of red and blue light-activated photoreceptors compete with downstream transcription factors for bindi

Cells, Genes & Molecules

A trick of the light: Optimizing light quality conditions speeds plant growth

Model identifies optimal light conditions to manipulate the circadian clock.

Rachel Shekar · 31 Mar 2022

Visualization of absorbed light for each leaf on a whole sapling. High relative absorption at the top and low at the bottom i

Computational Models

Simulating mangrove light interception

3D reconstruction of mangrove tree phyllotaxis from digitized plants yields novel data.

Rachel Shekar · 25 Mar 2022

Visualization of absorbed light for each leaf on a whole sapling. High relative absorption at the top and low at the bottom i

Computational Models

Simulación de la interceptación de la luz en los manglares

La reconstrucción en 3D de la filotaxis de los manglares a base de plantas digitalizadas arroja datos novedosos.

Rachel Shekar · 25 Mar 2022

Simulation der Lichtabsorption durch Mangroven

Computational Models

Simulation der Lichtabsorption durch Mangroven

Mangrovenwälder sind der Grundstein der tropischen und subtropischen Ökosysteme an den Küsten. Mangroven können dort wachsen, wo kein anderer Baum wachsen kann, und haben einen enormen

Rachel Shekar · 25 Mar 2022

Soil compaction and nitrate capture

Computational Models

Soil compaction and nitrate capture

While lateral roots comprise the bulk of root length, axial roots function as a scaffold determining the distribution of these laterals.

Alex Assiry · 18 Mar 2022

Finding the habitat of an invisible plant

Computational Models

Finding the habitat of an invisible plant

Finding a suitable habitat for Rafflesia arnoldii is difficult. While it produces the single largest flower on the planet, it’s invisible for much of its life.

Alun Salt · 2 Mar 2022

Scheme of water flowing through a plant: (1) from the soil towards the root surface, (2) from the root surface to the xylem,

Cells, Genes & Molecules

It’s all connected: modeling water potential and plant physiological processes

“As water potential is regarded the best indicator of plant water status, because it is the integrated result of above- and below-ground environmental conditions, it holds promise as a pivotal model variable to which other plant processes respond.”

Rachel Shekar · 28 Feb 2022

monocropping and diversified cropping examples (crop rotation and intercropping)

Computational Models

Modelling ecosystem services of diversified agriculture

Combining modelling approaches to better understand cultivated plant community functioning

Rachel Shekar · 8 Feb 2022

Computational model predicts soybean response to climate change

Cells, Genes & Molecules

Computational model predicts soybean response to climate change

A successful plant model has now been parameterized to include soybean growth under elevated CO2.

Rachel Shekar · 4 Feb 2022

Sample canola plants with contrasting architectures (top) and their calibrated models (bottom).

Computational Models

Creating visually realistic plant images to train neural networks

An interactive method for creating and calibrating developmental plant models expressed using L-systems

Rachel Shekar · 1 Feb 2022

Neural network tree

Computational Models

Deep learning techniques used to predict missing data

A new model produces 3D trees that are close to reality using predicted data.

Rachel Shekar · 28 Jan 2022

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