Plant Records: Don’t judge ryegrass by its looks

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Name: Perennial ryegrass

Scientific name: Lolium perenne L.

Known for: Being a super yummy forage grass for grazing ruminants and liked as turf for sports people in temperate climates of the world

Record broken: Two genomes in parallel!

Ryegrass does not look spectacular at first sight. If you live in a temperate climate, you have probably walked over it already without giving it a second thought. The significance of rye grass lies in its commercial value. It provides highest quality forage as fodder for grazing ruminant animals like dairy cows, and especially meat lovers will appreciate superior meat quality produced through rain-fed grown forage. Also the sales of turf grasses, which include one of the perennial ryegrass types, comes second in commercial value after corn seed sales in the US

Ryegrass
Ryegrass. Image Susanne Barth.

In 2016, not one but two genome drafts of perennial ryegrass were generated (Byrne et al. 2015; Velmurugan & Mollison et al. 2016), following rather similar strategies to provide much needed resources for genomic selection in this cross-pollinating plant species. Preparing these genome drafts was not a trivial task, since the ryegrass genome size is nearly more than half than that of the enormous barley genome (5100Mb: International Barley Genome Sequencing Consortium 2012). The estimated genome size was 2068 Mb, and 76% of the genome were estimated to be repetitive. Both draft genomes now cover 54% and 40% of the estimated genome size of perennial ryegrass, respectively.

Even though both teams were comparatively small, the advance in sequencing technologies and more efficient bioinformatics tools have enabled the non-thinkable from less than 10 years ago. Most gene coding areas are now well covered, and both genomes provide a wonderful resource to compare the genomes of the inbred lines of this species.

This also opens new opportunities to use both genomes for genetic improvement of this cross-pollinating forage and turf species. Velmurugan & Mollison et al. (2016) provide an anchorage of the genome to the highest genetic density available map of perennial ryegrass, and also provide an easy access to the genome with a genome browser.

References

Stephen L. Byrne, Istvan Nagy, Matthias Pfeifer, Ian Armstead, Suresh Swain, Bruno Studer, Klaus Mayer, Jacqueline D. Campbell, Adrian Czaban, Stephan Hentrup, Frank Panitz, Christian Bendixen, Jakob Hedegaard, Mario Caccamo, Torben Asp, 2015, 'A synteny-based draft genome sequence of the forage grassLolium perenne', The Plant Journal, vol. 84, no. 4, pp. 816-826 http://dx.doi.org/10.1111/tpj.13037

Klaus F. X. Mayer, Robbie Waugh, Peter Langridge, Timothy J. Close, Roger P. Wise, Andreas Graner, Takashi Matsumoto, Kazuhiro Sato, Alan Schulman, Gary J. Muehlbauer, Nils Stein, Ruvini Ariyadasa, Daniela Schulte, Naser Poursarebani, Ruonan Zhou, Burkhard Steuernagel, Martin Mascher, Uwe Scholz, Bujun Shi, Peter Langridge, Kavitha Madishetty, Jan T. Svensson, Prasanna Bhat, Matthew Moscou, Josh Resnik, Timothy J. Close, Gary J. Muehlbauer, Pete Hedley, Hui Liu, Jenny Morris, Robbie Waugh, Zeev Frenkel, Avraham Korol, Hélène Bergès, Andreas Graner, Nils Stein, Burkhard Steuernagel, Uwe Scholz, Stefan Taudien, Marius Felder, Marco Groth, Matthias Platzer, Nils Stein, Burkhard Steuernagel, Uwe Scholz, Axel Himmelbach, Stefan Taudien, Marius Felder, Matthias Platzer, Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesa Cordero, Marco Beccuti, Gianfranco Ciardo, Yaqin Ma, Steve Wanamaker, Timothy J. Close, Nils Stein, Federica Cattonaro, Vera Vendramin, Simone Scalabrin, Slobodanka Radovic, Rod Wing, Daniela Schulte, Burkhard Steuernagel, Michele Morgante, Nils Stein, Robbie Waugh, Thomas Nussbaumer, Heidrun Gundlach, Mihaela Martis, Ruvini Ariyadasa, Naser Poursarebani, Burkhard Steuernagel, Uwe Scholz, Roger P. Wise, Jesse Poland, Nils Stein, Klaus F. X. Mayer, Manuel Spannagl, Matthias Pfeifer, Heidrun Gundlach, Klaus F. X. Mayer, Heidrun Gundlach, Cédric Moisy, Jaakko Tanskanen, Simone Scalabrin, Andrea Zuccolo, Vera Vendramin, Michele Morgante, Klaus F. X. Mayer, Alan Schulman, Matthias Pfeifer, Manuel Spannagl, Pete Hedley, Jenny Morris, Joanne Russell, Arnis Druka, David Marshall, Micha Bayer, David Swarbreck, Dharanya Sampath, Sarah Ayling, Melanie Febrer, Mario Caccamo, Takashi Matsumoto, Tsuyoshi Tanaka, Kazuhiro Sato, Roger P. Wise, Timothy J. Close, Steve Wannamaker, Gary J. Muehlbauer, Nils Stein, Klaus F. X. Mayer, Robbie Waugh, Burkhard Steuernagel, Thomas Schmutzer, Martin Mascher, Uwe Scholz, Stefan Taudien, Matthias Platzer, Kazuhiro Sato, David Marshall, Micha Bayer, Robbie Waugh, Nils Stein, Klaus F. X. Mayer, Robbie Waugh, John W. S. Brown, Alan Schulman, Peter Langridge, Matthias Platzer, Geoffrey B. Fincher, Gary J. Muehlbauer, Kazuhiro Sato, Timothy J. Close, Roger P. Wise, Nils Stein, 2012, 'A physical, genetic and functional sequence assembly of the barley genome', Nature http://dx.doi.org/10.1038/nature11543

Janaki Velmurugan, Ewan Mollison, Susanne Barth, David Marshall, Linda Milne, Christopher J. Creevey, Bridget Lynch, Helena Meally, Matthew McCabe, Dan Milbourne, 2016, ' An ultra-high density genetic linkage map of perennial ryegrass ( Lolium perenne ) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly ', Annals of Botany, vol. 118, no. 1, pp. 71-87 http://dx.doi.org/10.1093/aob/mcw081


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